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Quasi-potential landscape in complex multi-stable systems

机译:复杂多稳系统中的准势能景观

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摘要

Developmental dynamics of multicellular organism is a process that takesplace in a multi-stable system in which each attractor state represents a celltype and attractor transitions correspond to cell differentiation paths. Thisnew understanding has revived the idea of a quasi-potential landscape, firstproposed by Waddington as a metaphor. To describe development one is interestedin the "relative stabilities" of N attractors (N>2). Existing theories of statetransition between local minima on some potential landscape deal with the exitin the transition between a pair attractor but do not offer the notion of aglobal potential function that relate more than two attractors to each other.Several ad hoc methods have been used in systems biology to compute a landscapein non-gradient systems, such as gene regulatory networks. Here we present anoverview of the currently available methods, discuss their limitations andpropose a new decomposition of vector fields that permit the computation of aquasi-potential function that is equivalent to the Freidlin-Wentzell potentialbut is not limited to two attractors. Several examples of decomposition aregiven and the significance of such a quasi-potential function is discussed.
机译:多细胞生物的发育动力学是在多稳定系统中发生的过程,其中每个吸引子状态代表一种细胞类型,吸引子转变对应于细胞分化路径。这种新的理解使瓦丁顿首先提出的隐喻性准景观的概念得以复兴。为了描述发展,人们对N个吸引子的“相对稳定性”感兴趣(N> 2)。现有的关于某些潜在景观的局部极小值之间的状态转换理论处理了一对吸引子之间的转移中的退出问题,但没有提供将两个以上吸引子相互关联的全局潜在功能的概念。系统中使用了几种临时方法生物学以计算非梯度系统(例如基因调控网络)中的景观。在这里,我们对当前可用的方法进行了概述,讨论了它们的局限性,并提出了一种矢量场的新分解方法,该方法可以计算与Freidlin-Wentzell势等效但不限于两个吸引子的准势函数。给出了分解的几个例子,并讨论了这种准势函数的重要性。

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